PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D05G1227
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Trihelix
Protein Properties Length: 274aa    MW: 31493.1 Da    PI: 4.686
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D05G1227genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.92.3e-12481241086
     trihelix  10 LiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  L++a   +  + +r+ l+   W+ev++k+++  + er+ +qC ++++ l+k+ykk+k++  + ts ++s+++yf++++
  Gh_D05G1227  48 LLNAWGGRFLQRGRNGLRSEEWQEVAEKVSKVSMiERTDTQCCNRLDTLKKKYKKEKAMLAE-TSATTSKWVYFKKVD 124
                  555555555666778899***********777666**************************9.578888******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.9E-1646125No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDNEDDDELD DGEDDDDDGS DKPKGYNENS NDVDLERHPK KRKLKNLLLN AWGGRFLQRG  60
RNGLRSEEWQ EVAEKVSKVS MIERTDTQCC NRLDTLKKKY KKEKAMLAET SATTSKWVYF  120
KKVDMLMSTP PQQGGLSCGM DLGEPIFVNP RAYSNCANGM DKMRDSPADS ESADSDEDIS  180
DGLPPKKRRF GRQYDEGSSF RMLADSIHKF SNIYEKIENS KRHQMLELEK MRMEIHMELE  240
MQKRRIMENA QAEIVKIQQG DEEDNDVSIE NASG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024104.11e-134Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
TrEMBLA0A061GAY61e-134A0A061GAY6_THECC; Alcohol dehydrogenase transcription factor Myb/SANT-like family protein
STRINGPOPTR_0001s18000.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15605916
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.17e-47Trihelix family protein